Hi Nikhil, I've encountered this issue as well when using the API. Some scripts were using a 5 second sleep default to allow for copying the file to the output directory, but I found that I needed up to 15 seconds (occasionally that's not even enough).
Cheers, Rob Rob Leclerc, PhD P: (US) +1-(917)-873-3037 P: (Shanghai) +86-1-(861)-612-5469 Personal Email: rob.lecl...@aya.yale.edu On Mar 28, 2013, at 10:06 PM, Nikhil Joshi <najo...@ucdavis.edu> wrote: > Hi all, > > So I have a tool that I am writing a wrapper script for that produces a > directory of images as one of its outputs. This directory gets created just > fine in the job_working_directory, but then when the job finishes and the > contents of the job_working_directory are copied, the copy of the images > directory is a zero-length *file*. I seem to recall having this problem > before and finding a solution to it, but now I can't seem to find it. Any > ideas? > > - Nik. > > -- > Nikhil Joshi > Bioinformatics Analyst/Programmer > UC Davis Bioinformatics Core > http://bioinformatics.ucdavis.edu/ > najoshi -at- ucdavis -dot- edu > 530.752.2698 (w) > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/
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