Hi Nikhil,

I've encountered this issue as well when using the API. Some scripts were using 
a 5 second sleep default to allow for copying the file to the output directory, 
but I found that I needed up to 15 seconds (occasionally that's not even 
enough).

Cheers,
Rob

Rob Leclerc, PhD

P: (US) +1-(917)-873-3037
P: (Shanghai) +86-1-(861)-612-5469
Personal Email: rob.lecl...@aya.yale.edu


On Mar 28, 2013, at 10:06 PM, Nikhil Joshi <najo...@ucdavis.edu> wrote:

> Hi all,
> 
> So I have a tool that I am writing a wrapper script for that produces a 
> directory of images as one of its outputs.  This directory gets created just 
> fine in the job_working_directory, but then when the job finishes and the 
> contents of the job_working_directory are copied, the copy of the images 
> directory is a zero-length *file*.  I seem to recall having this problem 
> before and finding a solution to it, but now I can't seem to find it.  Any 
> ideas?
> 
> - Nik.
> 
> -- 
> Nikhil Joshi
> Bioinformatics Analyst/Programmer
> UC Davis Bioinformatics Core
> http://bioinformatics.ucdavis.edu/
> najoshi -at- ucdavis -dot- edu
> 530.752.2698 (w)
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