Hi Dannon, Thanks for the response. Sorry to be pedantic, but just to make sure that I understand the interpretation of this field on the other side of the API, I would need to have something like the following:
data['filesystem_paths'] = "/home/me/file1.vcf \n /home/me/file2.vcf /n /home/me/file3.vcf" I assume I should also increase the time.sleep() to reflect the uploading of extra files? Cheers, Rob Rob Leclerc, PhD <http://www.linkedin.com/in/robleclerc> <https://twitter.com/#!/robleclerc> P: (US) +1-(917)-873-3037 P: (Shanghai) +86-1-(861)-612-5469 Personal Email: rob.lecl...@aya.yale.edu On Mon, Apr 29, 2013 at 9:15 AM, Dannon Baker <dannon.ba...@gmail.com>wrote: > Hey Rob, > > That example_watch_folder.py does just submit exactly one at a time, > executes the workflow, and then does the next all in separate transactions. > If you wanted to upload multiple filepaths at once, you'd just append more > to the ''filesystem_paths' field (newline separated paths). > > -Dannon > > > On Fri, Apr 26, 2013 at 11:54 PM, Rob Leclerc <robert.lecl...@gmail.com>wrote: > >> I'm looking at example_watch_folder.py and it's not clear from the >> example how you submit multiple datasets to a library. In the example, the >> first submit returns a libset [] with only a single entry and then proceeds >> to iterate through each dataset in the libset in the following section: >> >> data = {} >> >> data['folder_id'] = library_folder_id >> >> data['file_type'] = 'auto' >> >> data['dbkey'] = '' >> >> data['upload_option'] = 'upload_paths' >> >> >> >> *data['filesystem_paths'] = fullpath* >> >> data['create_type'] = 'file' >> >> libset = submit(api_key, api_url + "libraries/%s/contents" % >> library_id, data, return_formatted = False) >> >> time.sleep(5) >> >> for ds in libset: >> >> if 'id' in ds: >> >> wf_data = {} >> >> wf_data['workflow_id'] = workflow['id'] >> >> wf_data['history'] = "%s - %s" % (fname, >> workflow['name']) >> >> wf_data['ds_map'] = {} >> >> for step_id, ds_in in workflow['inputs' >> ].iteritems(): >> >> wf_data['ds_map'][step_id] = {'src':'ld', >> 'id':ds['id']} >> >> res = submit( api_key, api_url + 'workflows', >> wf_data, return_formatted=False) >> >> >> >> Rob Leclerc, PhD >> <http://www.linkedin.com/in/robleclerc><https://twitter.com/#!/robleclerc> >> P: (US) +1-(917)-873-3037 >> P: (Shanghai) +86-1-(861)-612-5469 >> Personal Email: rob.lecl...@aya.yale.edu >> >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> http://lists.bx.psu.edu/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ >> > >
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