On Jun 3, 2013, at 10:13 AM, Ramon Tiburski wrote: > I have a problem with a tool in R. I can't load the RPostgreSQL library that > I get the following error: > > ERROR: carregando pacotes exigidos: dbi > > My xml is this: > > <command interpreter="bash">r_wrapper.sh $script_file</command> > > <configfiles> > <configfile name="script_file"> > library(RPostgreSQL) > ... > </configfile> > </configfiles> > > I have this library installed at my system, what can I do?
Hi Ramon, Have you checked to make sure that the user that Galaxy runs as is able to find the library? Is it possible that it is installed for a single user or in a non-standard path that has not been configured for the Galaxy user? Does the script work if run directly on the command line as the Galaxy user? --nate > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
