On Mon, Jun 17, 2013 at 5:44 PM, Patel, Viren <vcpa...@emory.edu> wrote:
> Hello. I have installed Galaxy and run it successfully. Now I am trying to
> configure it to use DRMAA job runner. I created a job_conf.xml file as
> explained in the Galaxy wiki:
>
> <?xml version="1.0"?>
> <job_conf>
> <plugins>
> <plugin id="sge" type="runner"
> load="galaxy.jobs.runners.drmaa:DRMAAJobRunner" workers="4"/>
> </plugins>
> <destinations default="sge_default">
> <destination id="sge_default" runner="drmaa"/>
> </destinations>
> </job_conf>
>
I think you are missing the handlers configuration section. Assuming
you are using only one server called main([server:main] in
'universe_wsgi.ini') you should use something like this:
<?xml version="1.0"?>
<job_conf>
<plugins>
<plugin id="sge" type="runner"
load="galaxy.jobs.runners.drmaa:DRMAAJobRunner" workers="4"/>
</plugins>
<handlers default="handlers">
<!-- Additional job handlers - the id should match the name of a
[server:<id>] in universe_wsgi.ini.
-->
<handler id="main" tags="handlers"/>
</handlers>
<destinations default="sge_default">
<destination id="sge_default" runner="drmaa"/>
</destinations>
</job_conf>
The wiki[1] doesn't include the 'handlers' section in the examples. I
personally prefer starting from the supplied sample
file('job_conf.xml.sample_advanced').
[1]http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster
Hope it helps,
Carlos
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