Thanks Dannon,
I indeed managed to have the galaxy-central version installed.
I already see some problems but I will open another thread if necessary.
Regards the DB engine, this new Galaxy I am deploying now is only a toy
server I want to use in the Galaxy meeting in Oslo.
I would like to have the same configuration as the other server we
already have which using MySQL.
Thx a lot for your help
JF
On 06/21/2013 11:26 AM, Dannon Baker wrote:
Hi Jean-François,
The index issues preventing a new instance from starting are resolved
in the stable branch of galaxy-central; if you pull updates from that
branch you should be able to start a new instance. While the instance
will start and run, there are other peculiarities I still need to
resolve and I'd really recommend using postgres for a new instance at
this time if you're at all able to do so.
-Dannon
On Fri, Jun 21, 2013 at 5:07 AM, jean-François Taly
<jean-francois.t...@crg.eu <mailto:jean-francois.t...@crg.eu>> wrote:
Dear all,
I am having the same problem as Linda with a fresh installation of
version 20130603.
In the thread of her mail Dannon Baker said :
"That said, this doesn't resolve the mysql index issues, which I'm
currently working on. I hope to have a fix for them available
soon, though."
I would like to know if what is the status of this thread. Should
I use the solution provided in Linda's mail (CREATE INDEX
ix_history_slug ON history (slug(1000));)
Thx a lot for your help
Best
Jean-François
On 06/05/2013 05:12 PM, Linda Cham wrote:
Hi. I am new to the Galaxy forum and I am trying to setup a new
local Galaxy instance with MySQL on RH6.2 x86_64.
On a newly installed OS node, using the hg clone command (hg
clone _https://bitbucket.org/galaxy/galaxy-dist#stable_
<https://bitbucket.org/galaxy/galaxy-dist>) which gets the
current Galaxy 20130603 image, I am getting the following errors
when running run.sh:
File "build/bdist.linux-x86_64-ucs4/egg/MySQLdb/cursors.py",
line 173, in execute
self.errorhandler(self, exc, value)
File
"build/bdist.linux-x86_64-ucs4/egg/MySQLdb/connections.py", line
36, in defaulterrorhandler
raise errorclass, errorvalue
OperationalError: (OperationalError) (1170, "BLOB/TEXT column
'slug' used in key specification without a key length") 'CREATE
INDEX ix_history_slug ON history (slug)' ()
Reading the forum, someone stated it can be bypass by running the
CREATE INDEX.
mysql> CREATE INDEX ix_history_slug ON history (slug(1000));
Query OK, 0 rows affected (0.09 sec)
Records: 0 Duplicates: 0 Warnings: 0
--
#####################################
Jean-François Taly
Bioinformatician
Bioinformatics Core Facility
http://biocore.crg.cat
CRG - Centre de Regulació Genòmica (Room 439)
Parc de Recerca Biomèdica de Barcelona (PRBB)
Doctor Aiguader, 88
08003 Barcelona
Spain
email:jean-francois.t...@crg.eu <mailto:jean-francois.t...@crg.eu>
phone:+34 93 316 0202 <tel:%2B34%2093%20316%200202>
fax:+34 93 316 0099 <tel:%2B34%2093%20316%200099>
#####################################
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--
#####################################
Jean-François Taly
Bioinformatician
Bioinformatics Core Facility
http://biocore.crg.cat
CRG - Centre de Regulació Genòmica (Room 439)
Parc de Recerca Biomèdica de Barcelona (PRBB)
Doctor Aiguader, 88
08003 Barcelona
Spain
email:jean-francois.t...@crg.eu
phone: +34 93 316 0202
fax: +34 93 316 0099
#####################################
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
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