Nice catch! I'll see where this leads.
On Tue, Jul 16, 2013 at 7:03 AM, Groot, Philip de <philip.degr...@wur.nl>wrote: > Hi Carl, > > Thank you for your quite extensive answer! I finally managed to find the > line in universe_wsgi.ini that caused the problem. > > The moment I UNCOMMENT the following line: > #log_actions = True > > I no longer can see the histories. The moment I comment this line again > everything works fine. > Anyway, this exercise resulted in a clean and updated universe_wsgi.ini > file and the problem is solved now! > > Thank you for your help! > > Regards, > > Dr. Philip de Groot Ph.D. > Bioinformatics Researcher > > Wageningen University / TIFN > Nutrigenomics Consortium > Nutrition, Metabolism & Genomics Group > Division of Human Nutrition > PO Box 8129, 6700 EV Wageningen > Visiting Address: Erfelijkheidsleer: De Valk, Building 304 > Dreijenweg 2, 6703 HA Wageningen > Room: 0052a > T: +31-317-485786 > F: +31-317-483342 > E-mail: philip.degr...@wur.nl<mailto:philip.degr...@wur.nl> > Internet: http://www.nutrigenomicsconsortium.nl > http://humannutrition.wur.nl/ > https://madmax.bioinformatics.nl/ > ________________________________ > From: Carl Eberhard [carlfeberh...@gmail.com] > Sent: 11 July 2013 16:34 > To: Groot, Philip de > Cc: galaxy-dev@lists.bx.psu.edu; ambrose.andong...@rothamsted.ac.uk > Subject: Re: Strange behaviour with galaxy history > > Hello, Phillip > > I haven't been able to replicate this yet (https://trello.com/c/LdLlJDo9). > Do you see any errors in your log near or after "GET /history/list > HTTP/1.1"? > > Shane Sturrock worked around this problem by updating his > universe_wsgi.ini file (if I understand his procedure): > 1. Make a backup of your universe_wsgi.ini file (for example, copy it to > your home directory) > 2. Rename the universe_wsgi.ini file in your galaxy installation something > like 'universe_wsgi.ini.saved' > 3. Rename the most recent universe_wsgi.ini.sample file (that came with > the latest update) to universe_wsgi.ini. > 4. Copy any custom settings for your server from your older > universe_wsgi.ini.saved file to the newer universe_wsgi.ini file > 5. Start Galaxy > > That seemed to work for Shane. Ambrose re-installed and reconnected his > database. Neither is a solution to the original cause, but you may want to > try them while we investigate. > > Thanks, > Carl > > > > > On Thu, Jul 11, 2013 at 5:48 AM, Groot, Philip de <philip.degr...@wur.nl > <mailto:philip.degr...@wur.nl>> wrote: > Hi, > > > > First of all, I apologize for interrupting into this discussion, but I > have exactly the same problem and did not find a solution yet. And no: > prefix and cookies are set properly in our particular setting (as "/")! > This is not the cause... > > > > I think that the problem occurred with the May Galaxy update, but it was > unnoticed for a while. Problem is that the histories of all users are not > listed when being asked for it within Galaxy. Only the current history is > present for every user. In addition, when I login using another computer, a > different history is being depicted (which suggest a cookie issue but I > just cannot find it). Copying the current history works but the copy is not > listed either. > > > > In the postgres database, the histories are properly listed. If I type in > the proper history name in Galaxy, I even get the stored history back! So > this all works, but users cannot see their histories. The java console does > not reveal any problem. prefix and cookie are set properly (I think). So I > don't know. Does anyone have any clue on how to tackle this issue? I am > happy to provide more information if needed! > > > > Thanks! > > > > Dr. Philip de Groot Ph.D. > Bioinformatics Researcher > > Wageningen University / TIFN > Nutrigenomics Consortium > Nutrition, Metabolism & Genomics Group > Division of Human Nutrition > PO Box 8129, 6700 EV Wageningen > Visiting Address: Erfelijkheidsleer: De Valk, Building 304 > Dreijenweg 2, 6703 HA Wageningen > Room: 0052a > T: +31-317-485786<tel:%2B31-317-485786> > F: +31-317-483342<tel:%2B31-317-483342> > E-mail: philip.degr...@wur.nl<mailto:philip.degr...@wur.nl><mailto: > philip.degr...@wur.nl<mailto:philip.degr...@wur.nl>> > Internet: http://www.nutrigenomicsconsortium.nl< > http://www.nutrigenomicsconsortium.nl/> > http://humannutrition.wur.nl/ > https://madmax.bioinformatics.nl/ > > > >
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