Il 2013-07-30 17:18 Peter Cock ha scritto:
Hello all,
Re:
http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010153.html
http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-October/011557.html
Something I raised during the GCC2013, and we talked about
via Twitter as well was a Galaxy environment variable for use
within Tool Wrappers setting the number of threads/CPUs to
use.
The idea is that you can configure a default value, and then
override this per runner or per tool etc.
Thanks Peter for pushing this idea, I totally support this proposal.
In the mean time, I've been using for my tools the solution by Jim
Johnson for its CD-HIT wrapper:
http://toolshed.g2.bx.psu.edu/view/jjohnson/cdhit
But this requires the system administrator to modify both the tool
env.sh and job_conf.xml to be in sync.
Is there an open Trello card for this?
A Trello card would be useful indeed.
Nicola
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