Thanks for the reply Bjoern. It's installed correctly - green box. The emboss entries in tool_dependency and tool_shed_repository look fine as well. If I directly run an emboss command (e.g. antigenic) from CLI then it seems to be working.
-- Shantanu On Aug 15, 2013, at 2:53 PM, Björn Grüning wrote: > Hi Shantanu, > > can you have a look in the Admin menu if EMBOSS is installed correctly > (green) or if it failed (red)? > > Thanks, > Bjoern > >> I have migrated Emboss tool from dist to tool-shed using the migration >> script and later updated it's revision. The tool was installed along with >> it's dependencies, but it's failing to find them during job run. It's >> logging following 'Failed to resolve dependency on 'emboss', ignoring' >> warning message in the log file. It seems like >> build_dependency_shell_commands method in '/lib/galaxy/tools/__init__.py' is >> unable to get installed_tool_dependencies. I am not sure why this would fail >> and how to resolve it. I have tried resetting tool metadata several times, >> but that didn't help. Appreciate any help on resolving this error. I am >> using Galaxy release_2013.06.03 revision. >> >> Thanks, >> Shantanu >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> http://lists.bx.psu.edu/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ > > > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
