On Thu, Sep 12, 2013 at 2:01 PM, Mathieu Bahin <mathieu.ba...@irisa.fr> wrote: > Hi all, > > We have been developing our own Galaxy instance for a while now. We have a > cluster on which the job are sent to be executed, it is managed through SGE. > Usually, communication between SGE and DRMAA is ok and we don't have any > problem with that. > > When a job is deleted by the user, most of the times, the job disappears but > sometimes, we don't know why, the job stays and has the status 'dr' within > SGE. If we don't kill it 'manually', it stays forever. It is not always the > same tools which produces this error. > Have you any idea why how manage it ?
I have noticed problem with our DRMMA/SGE setup where a user can cancel a large job (using the job splitter in at least some cases), but Galaxy does not seem to cancel the jobs on the cluster. I've not tried to diagnose this yet - it could be a similar issue though. Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
