Peter,
Thanks for the followup report, I've committed a fix for that issue in
10838:c0f049223e27.
--Dave B.
On 10/08/2013 06:18 AM, Peter Cock wrote:
Title was: [galaxy-iuc] Platform-specific tool dependency support has
been enhanced.
On Fri, Oct 4, 2013 at 6:08 PM, Dave Bouvier <d...@bx.psu.edu> wrote:
Peter,
Thank you for reporting that error, I've committed a fix in
10791:6e063ca1960f.
--Dave B.
Hi Dave,
The new platform specific actions seem to be working nicely
for the BLAST+ binaries (see other thread), however there
may be some lingering regressions due to being in the wrong
directory after downloading files (further to the examples
Bjoern and I raised last week).
These 3 were all working in the past (I would have reported
them earlier but they fell under the most recent round of
"missing test results").
Thanks,
Peter
----------------------------------------------------
http://testtoolshed.g2.bx.psu.edu/view/peterjc/nlstradamus/81cac85fc286
Tests that failed
Tool id: nlstradamus
Tool version: nlstradamus
...
Fatal error: Exit code 127 ()
/bin/sh: 1: NLStradamus: not found
----------------------------------------------------
http://testtoolshed.g2.bx.psu.edu/view/peterjc/effectivet3/1e681e19e35c
Tests that failed
Tool id: effectiveT3
Tool version: effectiveT3
...
Fatal error: Exit code 1 ()
Contents of
'/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/module'
is
Main JAR was found:
'/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/TTSS_GUI-1.0.1.jar'
Effective T3 model JAR file not found:
'/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/module/TTSS_ANIMAL-1.0.1.jar'
...
Stderr:
Fatal error: Exit code 1 ()
Contents of
'/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/module'
is
Main JAR was found:
'/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/TTSS_GUI-1.0.1.jar'
Effective T3 model JAR file not found:
'/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/module/TTSS_PLANT-1.0.1.jar'
----------------------------------------------------
http://testtoolshed.g2.bx.psu.edu/view/peterjc/clinod/0d39248a7a9f
Tests that failed
Tool id: clinod
Tool version: clinod
...
Stderr:
Fatal error: Exit code 1 ()
Cannot find a Batchman executable!
Batchman does not exist in
/ToolDependencies/clinod/1.3/peterjc/clinod/0d39248a7a9f/batchman
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