Just following up on this. So it's ok to do all of my customizations in /mnt/galaxyData?
Or am I doing something wrong, and I need to figure out how to boot up into a version that has /mnt/galaxy? Thanks again, Greg On Fri, Dec 20, 2013 at 2:49 PM, greg <margeem...@gmail.com> wrote: > Yes, I just launched it a few hours ago. > > I just went here and filled out the form: > https://usegalaxy.org/cloudlaunch > > I chose "data cluster" when prompted and enter 5GB. > > > On Fri, Dec 20, 2013 at 2:48 PM, Dannon Baker <dannon.ba...@gmail.com> wrote: >> And is this a new instance you've just launched? If so, how'd you launch >> it? >> >> >> On Fri, Dec 20, 2013 at 2:37 PM, greg <margeem...@gmail.com> wrote: >>> >>> Here's what I'm seeing: >>> >>> ubuntu@ip-10-182-195-79:/$ ls / >>> bin boot dev etc export home initrd.img lib lib64 lost+found >>> media mnt opt proc root run sbin selinux srv sys tmp usr >>> var vmlinuz >>> ubuntu@ip-10-182-195-79:/$ ls mnt >>> cm galaxyData lost+found transient_nfs >>> ubuntu@ip-10-182-195-79:/$ ls /mnt/galaxyData/ >>> export files tmp upload_store >>> >>> >>> >>> On Fri, Dec 20, 2013 at 2:20 PM, Dannon Baker <dannon.ba...@gmail.com> >>> wrote: >>> > Does /mnt/galaxy exist, and does it have all of the expected galaxy >>> > components? /mnt/galaxyData might exist, but it should be either empty >>> > or a >>> > symlink to /mnt/galaxy if I remember correctly. >>> > >>> > If you're launching your cluster from usegalaxy.org/cloudlaunch, you >>> > should >>> > always be using the latest stuff. >>> > >>> > >>> > On Fri, Dec 20, 2013 at 2:13 PM, greg <margeem...@gmail.com> wrote: >>> >> >>> >> Thanks. I was wrong before. I actually do see a /mnt/galaxyData. >>> >> >>> >> Should I not being seeing that? Am I not on cloudman 2.0? >>> >> >>> >> -Greg >>> >> >>> >> On Fri, Dec 20, 2013 at 1:57 PM, Dannon Baker <dannon.ba...@gmail.com> >>> >> wrote: >>> >> > With the Cloudman 2.0 release, the galaxyData and galaxyTools volumes >>> >> > have >>> >> > been merged to a single 'galaxy' volume. /mnt/galaxy is now your >>> >> > single >>> >> > persistent (by default, at least) volume, so, if you install your >>> >> > tool >>> >> > to >>> >> > here and share everything should work as expected. >>> >> > >>> >> > -Dannon >>> >> > >>> >> > >>> >> > On Fri, Dec 20, 2013 at 1:53 PM, greg <margeem...@gmail.com> wrote: >>> >> >> >>> >> >> Hi guys, >>> >> >> >>> >> >> I just launched an instance from https://usegalaxy.org/cloudlaunch >>> >> >> and >>> >> >> chose "data cluster" when prompted. >>> >> >> >>> >> >> Everything seems to have gone ok, but when I ssh in, I don't see >>> >> >> /mnt/galaxyData >>> >> >> >>> >> >> >>> >> >> Background: >>> >> >> >>> >> >> Basically we have a bioinformatics tool that needs SGE to run. So I >>> >> >> want to install it on a galaxy cloud instance and then provide the >>> >> >> share string to other researchers. >>> >> >> >>> >> >> I did this successfully a year or two ago by installing it to >>> >> >> /mnt/galaxyData. >>> >> >> >>> >> >> Thanks, >>> >> >> >>> >> >> Greg >>> >> >> ___________________________________________________________ >>> >> >> Please keep all replies on the list by using "reply all" >>> >> >> in your mail client. To manage your subscriptions to this >>> >> >> and other Galaxy lists, please use the interface at: >>> >> >> http://lists.bx.psu.edu/ >>> >> >> >>> >> >> To search Galaxy mailing lists use the unified search at: >>> >> >> http://galaxyproject.org/search/mailinglists/ >>> >> > >>> >> > >>> > >>> > >> >> ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
