On Thu, Nov 21, 2013 at 10:10 PM, Dr. César Rodríguez Sánchez <cesar.rodriguezsanc...@ucr.ac.cr> wrote: > Dear Nate, > I am trying to install galaxy on a different computer. This time it does not > run because of the following: > > Traceback (most recent call last): > File "./scripts/paster.py", line 33, in <module> > serve.run() > File "/Users/rodriguez/galaxy-dist/lib/galaxy/util/pastescript/serve.py", > line 1049, in run > File "/Users/rodriguez/galaxy-dist/lib/galaxy/util/pastescript/serve.py", > line 1055, in invoke > File "/Users/rodriguez/galaxy-dist/lib/galaxy/util/pastescript/serve.py", > line 220, in run > File "/Users/rodriguez/galaxy-dist/lib/galaxy/util/pastescript/serve.py", > line 643, in command > File > "/Users/rodriguez/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line > 350, in loadapp > File > "/Users/rodriguez/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line > 374, in loadobj > File > "/Users/rodriguez/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line > 399, in loadcontext > File > "/Users/rodriguez/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line > 423, in _loadconfig > File > "/Users/rodriguez/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line > 561, in get_context > File > "/Users/rodriguez/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line > 620, in _context_from_explicit > File > "/Users/rodriguez/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line > 125, in import_string > File "/Users/rodriguez/galaxy-dist/lib/pkg_resources.py", line 1954, in > load > entry = __import__(self.module_name, globals(),globals(), ['__name__']) > File "/Users/rodriguez/galaxy-dist/lib/galaxy/web/__init__.py", line 4, in > <module> > File "/Users/rodriguez/galaxy-dist/lib/galaxy/web/framework/__init__.py", > line 40, in <module> > File > "/Users/rodriguez/galaxy-dist/eggs/Babel-0.9.4-py2.6.egg/babel/support.py", > line 29, in <module> > File > "/Users/rodriguez/galaxy-dist/eggs/Babel-0.9.4-py2.6.egg/babel/dates.py", > line 34, in <module> > File > "/Users/rodriguez/galaxy-dist/eggs/Babel-0.9.4-py2.6.egg/babel/core.py", > line 642, in default_locale > File > "/Users/rodriguez/galaxy-dist/eggs/Babel-0.9.4-py2.6.egg/babel/core.py", > line 763, in parse_locale > ValueError: expected only letters, got 'utf-8' > > How can I solve this locale issue?
Hi Cesar, Sorry I didn't get back to you earlier. If you haven't yet discovered the solution, this is occurring because of a bug in the version of the Babel library Galaxy is using. To work around this, set the environment variable `LC_ALL` to a valid locale, e.g. 'en_US.UTF-8' or 'C', before starting Galaxy: % export LC_ALL='en_US.UTF-8' % sh run.sh --nate > Thanks > Cesar > De: Nate Coraor <n...@bx.psu.edu> > Fecha: miércoles 20 de noviembre de 2013 08:12 > Para: César Rodríguez Sánchez <cesar.rodriguezsanc...@ucr.ac.cr> > CC: <galaxy-...@bx.psu.edu> > Asunto: Re: [galaxy-dev] Local installation problem > > Hi Cesar, > > The easiest way to avoid module version conflicts is to use virtualenv to > set up a self-contained environment: > > > http://wiki.galaxyproject.org/Admin/Config/Performance/ProductionServer#Use_a_clean_environment > > --nate > > > On Tue, Nov 19, 2013 at 4:02 PM, Cesar Rodriguez > <cesar.rodriguezsanc...@ucr.ac.cr> wrote: >> >> Hi there, >> I am trying to install Galaxy locally on my Mac OSX 10.9, python 2.7. >> Nonetheless, when I run it, it says that some eggs are out of date. I have >> fetched them, but the following message appears: >> >> >> Mac-Pro-Cesar-Rodriguez:scripts Rodriguez$ python fetch_eggs.py >> >> Warning: MarkupSafe (a dependent egg of Mako) cannot be fetched >> >> Warning: pycrypto (a dependent egg of Fabric) cannot be fetched >> >> Fetched http://eggs.galaxyproject.org/paramiko/paramiko-1.11.1-py2.7.egg >> >> One of Galaxy's managed eggs depends on something which is missing, this >> is almost certainly a bug in the egg distribution. >> >> Dependency "paramiko" requires "pycrypto>=2.1,!=2.4" >> >> Traceback (most recent call last): >> >> File "fetch_eggs.py", line 37, in <module> >> >> c.resolve() # Only fetch eggs required by the config >> >> File "/Users/Rodriguez/galaxy-dist/lib/galaxy/eggs/__init__.py", line >> 345, in resolve >> >> egg.resolve() >> >> File "/Users/Rodriguez/galaxy-dist/lib/galaxy/eggs/__init__.py", line >> 168, in resolve >> >> dists = pkg_resources.working_set.resolve( ( >> self.distribution.as_requirement(), ), env, self.fetch ) >> >> File "/Users/Rodriguez/galaxy-dist/lib/pkg_resources.py", line 569, in >> resolve >> >> raise VersionConflict(dist,req) # XXX put more info here >> >> pkg_resources.VersionConflict: (paramiko 1.11.1 >> (/Users/Rodriguez/galaxy-dist/eggs/paramiko-1.11.1-py2.7.egg), >> Requirement.parse('pycrypto>=2.1,!=2.4’)) >> >> >> What should I do to fix this? >> >> Thank you so much for your help. >> >> Cesar >> >> >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> http://lists.bx.psu.edu/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ > > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
