On which Galaxy server are you running your analyses? Using a current Galaxy instance and Tophat v2.0.10, I wasn't able to reproduce the issue.
Thanks, J. -- Jeremy Goecks Assistant Professor, Computational Biology Institute George Washington University On Jan 13, 2014, at 11:28 AM, "Bankers, Laura A" <laura-r...@uiowa.edu> wrote: > To whom it may concern, > > I am a grad student at the University of Iowa using Galaxy to analyze data > from an RNA-seq experiment. I have been using Tophat2 and noticed that it is > not longer providing an alignment summary text file in the output, which it > used to do. I was wondering if this was an error, or if there was a way to > obtain that output file (as the information is incredibly useful). > > Thanks, > Laura > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
