Thks Thomas,
Indeed the configuration you provide is the one we use here.
However we do not use the nginx proxy (yet ;-))
We are waiting for the next galaxy-dist release to see if it will fix
our problem.
Vincent
Vincent Navratil, PhD
IR UCBL - PRABI
http://www.prabi.fr
Bâtiment Gregor Mendel
Université Claude Bernard -- Lyon 1
16, rue Raphaël Dubois
69622 VILLEURBANNE CEDEX
Tel: +33 472432826
My 'ome' page http://vinavratil.free.fr
Le 2/4/14 5:06 PM, Thomas Bellembois a écrit :
On 04/02/2014 16:37, navratil wrote:
Dear galaxy-dev team,
We have configured a galaxy-dist server (stable release) behind an
Apache2 proxy (with mod_xsendfile) by following the galaxy wiki.
We would like to use the galaxy embeded user authentification with
require_login=True option instead of a remote_user configuration on
the proxy side.
With require_login = False it works but with require_login=True
configuration we fail to load .bam files into IGV (local) :
The IGV (Version 2.3.18) send this error:
*/INFO [2014-02-04 16:05:56,660] [MessageUtils.java:60] [Thread-9]
Error loading
http://XXXXXX/display_application/03501d7626bd192f/igv_bam/local_default/845a235de3463571/data/galaxy_03501d7626bd192f.bam:
An error occurred while accessing:
http://XXXXXX/display_application/03501d7626bd192f/igv_bam/local_default/845a235de3463571/data/galaxy_03501d7626bd192f.bam<br>Invalid
GZIP/**/header/**/
/*
and the galaxy-server send this error_log:
*/----------------------------------------/**/
/**/XXXXXX - - [04/Feb/2014:16:05:40 +0200] "HEAD
/display_application/03501d7626bd192f/igv_bam/local_default/845a235de3463571/data/galaxy_03501d7626bd192f.bam
HTTP/1.1" 302 - "-" "IGV Version 2.3.18 (20)09/05/2013 12:24 PM"/**/
/**/XXXXXX - - [04/Feb/2014:16:05:40 +0200] "HEAD /root HTTP/1.1" 200
- "-" "IGV Version 2.3.18 (20)09/05/2013 12:24 PM"/**/
/**/----------------------------------------/**/
/**/Exception happened during processing of request from
('127.0.0.1', 46142)/**/
/**/Traceback (most recent call last):/**/
/**/ File
"/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py",
line 1068, in process_request_in_thread/**/
/**/ self.finish_request(request, client_address)/**/
/**/ File "/usr/lib/python2.7/SocketServer.py", line 334, in
finish_request/**/
/**/ self.RequestHandlerClass(request, client_address, self)/**/
/**/ File "/usr/lib/python2.7/SocketServer.py", line 651, in
__init__/**/
/**/ self.finish()/**/
/**/ File "/usr/lib/python2.7/SocketServer.py", line 710, in finish/**/
/**/ self.wfile.close()/**/
/**/ File "/usr/lib/python2.7/socket.py", line 279, in close/**/
/**/ self.flush()/**/
/**/ File "/usr/lib/python2.7/socket.py", line 303, in flush/**/
/**/self._sock.sendall(view[write_offset:write_offset+buffer_size])/**/
/**/error: [Errno 32] Broken pipe/**/
/**/----------------------------------------/**/
/**/XXXXXX - - [04/Feb/2014:16:05:40 +0200] "GET
/display_application/03501d7626bd192f/igv_bam/local_default/845a235de3463571/data/galaxy_03501d7626bd192f.bam
HTTP/1.1" 302 - "-" "IGV Version 2.3.18 (20)09/05/2013 12:24 PM"/**/
/**/XXXXXX - - [04/Feb/2014:16:05:40 +0200] "GET /root HTTP/1.1" 200
- "-" "IGV Version 2.3.18 (20)09/05/2013 12:24 PM/*
Any idea ?
Vincent
--
Vincent Navratil, PhD
IR UCBL - PRABI
http://www.prabi.fr
Bâtiment Gregor Mendel
Université Claude Bernard -- Lyon 1
16, rue Raphaël Dubois
69622 VILLEURBANNE CEDEX
Tel: +33 472432826
My 'ome' pagehttp://vinavratil.free.fr
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Hi Vincent,
I had the same issue with NGINX.
Ensure that "#filter-with = gzip" is commented out in your
universe_wsgi.ini.
I also have "upstream_gzip = False"
Hope this helps,
Regards,
Thomas
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
