Hi Adam, This is going to depend entirely on the tools you're using. I'd suggest running your typical workload and examining the I/O patterns to determine what makes the most sense. I'd think the temp directory, input dataset, and output dataset filesystems to be the most utilized.
--nate On Fri, Feb 14, 2014 at 12:31 PM, Panzer, Adam <panze...@kids.wustl.edu>wrote: > Hello All, > > I recently was gifted an ioFusion ioFX acceleration card to help speed > my bioinformatics work along and I am wondering how best to integrate it > into my instance to make Galaxy more efficient. Is it sufficient to > merely ensure that the datasets being operated on are on the flash > storage (I guess by placing the main Galaxy directory there) or are > there other elements that should also move lest they create bottlenecks > elsewhere (tmp directory, files related to proxy/ftp server, tool shed, > etc.)? Suggestions will be greatly appreciated. > > Thanks, > Adam > > > The materials in this email are private and may contain Protected Health > Information. If you are not the intended recipient, be advised that any > unauthorized use, disclosure, copying, distribution or the taking of any > action in reliance on the contents of this information is strictly > prohibited. If you have received this email in error, please immediately > notify the sender via telephone or return email. > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
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