Hello,
I am trying to visualize a large genome (Large number of scaffolds) and
a large (bam file) in trackster on our local galaxy instance (running
release_2014.02.10).
When ever I try to do the above I see the following error in the logs:
File "bbi_file.pyx", line 215, in bx.bbi.bbi_file.BBIFile.query
(lib/bx/bbi/bbi_file.c:5596)
File "bbi_file.pyx", line 222, in bx.bbi.bbi_file.BBIFile.query
(lib/bx/bbi/bbi_file.c:5210)
File "bbi_file.pyx", line 183, in bx.bbi.bbi_file.BBIFile.summarize
(lib/bx/bbi/bbi_file.c:4475)
File "bbi_file.pyx", line 248, in
bx.bbi.bbi_file.BBIFile._get_chrom_id_and_size (lib/bx/bbi/bbi_file.c:5656)
File "bpt_file.pyx", line 76, in bx.bbi.bpt_file.BPTFile.find
(lib/bx/bbi/bpt_file.c:1388)
File "bpt_file.pyx", line 55, in bx.bbi.bpt_file.BPTFile.r_find
(lib/bx/bbi/bpt_file.c:1154)
AttributeError: 'BinaryFileReader' object has no attribute 'read_bits64'
Trackster works OK when I load smaller data sets.
It seems that there was a fix for this in bx-python code, as per mail
from Jeremy
(http://dev.list.galaxyproject.org/trackster-error-for-viewing-rat-data-rn5-tp4662664p4662672.html).
How do I get the fixed code into my galaxy instance?
Thanks,
-Raj
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