I feel like someone should respond to this but I must admin I don't have a lot of ideas.
I assume you are able to use qsub to submit jobs from the Galaxy server? This is worth verifying that before anything else. If that doesn't work - the system configuration needs to be modified. I think there are a couple different implementations of DRMAA for PBS: http://apps.man.poznan.pl/trac/pbs-drmaa (I think this is recommend one). http://sourceforge.net/projects/pbspro-drmaa/ It might be worth trying to compile the latest and great of one or both and target both. Galaxy also has a PBS runner that many people use for communicating with Torque. I think the DRMAA runner should work - but this is a fallback option as well just to get going. -John ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
