Jan,
In order to help track down this issue, could you provide the
tool_dependencies.xml you're using?
--Dave B.
On Tue 24 Jun 2014 05:40:30 AM EDT, Jan Kanis wrote:
In a tool_dependency.xml file I want to install python package lxml in
a virtual environment, as a tool I'm building needs it. The python
lxml package requires the libxml2 tool dependency. I have added a
set_environment_for_install action that refers to the libxml2
repository, but when python/pip tries to install lxml it fails,
apparently because it can't find the required headers. This appears to
be because the setup_virtualenv action does not include install
environment variables.
It seems to me that install environment variables should be sourced
for every following action that can do nontrivial things, not just
shell commands.
Alternatively, am I trying to install lxml the wrong way, is there a
better way? (I'm running on python 2.6)
Jan
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
