About the datatype. So you are thinking of a new datatype that applies to files that hold the versioned database contents (in this case a structured key-value fasta identifier/sequence pairs, right?) Then the fasta archive versioning tool would take only files of that datatype for input. That sounds good.
I was just going to have one folder (and its subfolders) in the data library that hold all the versioned databases to choose from. So the versioned database tool would just populate its input list based on that subfolder tree. But ensuring that it lists only files of a certain datatype sounds beneficial. Output in any case would be a fasta file that other tools are already expecting; I wasn't going to leave that as just "fasta" datatype since it seems tools like makeblastdb don't allow anything else as input from user history. I'm hoping that a global (admin) API key can be used by the tool so that all users can get versioned data, but maybe that is a pipe dream. Sure I'd like to see old patches! d. ________________________________________ From: Bj?rn Gr?ning [bjoern.gruen...@gmail.com] Sent: Saturday, August 23, 2014 12:17 AM To: Dooley, Damion; galaxy-dev@lists.bx.psu.edu Cc: Hsiao, William Subject: Re: [galaxy-dev] Concept for a Galaxy Versioned Fasta Data Retrieval Tool Hi Damion, the idea sounds fantastic! Can we go a step further and use a specific datatype that keeps entire fasta files versioned and the user can choose which version he wants to use, in any tool? Please have a look at my talk at GCC2012. Maybe you are interested in the (old) patches. I would be very interested to restart this old project. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
