Hello John, I had forgotten that these migration scripts exist. It should work better now. :)
Regards, Thomas -- Thomas Bellembois, Network and System Administrator, IGFL (France) http://perso.ens-lyon.fr/thomas.bellembois - +33 4 26 73 13 67 (IGFL internal IT doc: http://itdoc.igfl.ens-lyon.fr/itdoc) On 09/09/2014 15:05, John Chilton wrote: > Hello Thomas, > > After public debate on Trello, there have been a couple tools that > have indeed disappeared completely but nearly all tools that have gone > away have been migrated to the tool shed and can be recovered with the > migration scripts that are included with each new release > (https://wiki.galaxyproject.org/MigratingToolsFromGalaxyDistribution). > Are you running those scripts and still having those problems or were > you not aware of these scripts? > > My understanding is that if you are running these scripts workflows > and tool re-runs should continue to work. (Am I wrong about this?). > > If particular tools don't disappear but no longer work - this sounds > like a bug and you should let the list or Trello know so that the > devteam can attempt to fix the problem or at least be aware it exists. > > Hopefully at some point soon nearly all of the tools will be > migrated out the core release and the devteam will provide some > mechanism to quickly deploy complete say NGS packages all at once to > new releases. Once everything is in the tool shed then hopefully these > problems will go away. (There will be new problems of course - but > hopefully updates will easier). > > -John > > > On Tue, Sep 9, 2014 at 5:49 AM, Thomas Bellembois > <thomas.bellemb...@ens-lyon.fr> wrote: >> Hello, >> >> I try to keep our Galaxy instance up to date. >> Very often, some tools disappear and other do not work anymore. This >> breaks some users workflows. >> >> I may miss something. Is there a "best update pratice" to keep a Galaxy >> instance and the tool-sheds fully functionnal ? >> >> Regards, >> >> Thomas >> >> -- >> Thomas Bellembois, Network and System Administrator, IGFL (France) >> http://perso.ens-lyon.fr/thomas.bellembois - +33 4 26 73 13 67 >> (IGFL internal IT doc: http://itdoc.igfl.ens-lyon.fr/itdoc) >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> http://lists.bx.psu.edu/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
