Hi ,
I am trying to get a dependency to work in practice (when running a tool after
the installation). But I keep getting the following message when running the
tool:
[sshexec] galaxy.tools.deps DEBUG 2014-10-24 16:04:15,514 Building dependency
shell command for dependency 'R_bioc_metams'
[sshexec] galaxy.tools.deps WARNING 2014-10-24 16:04:15,514 Failed to resolve
dependency on 'R_bioc_metams', ignoring
This is the tool requirements section:
<requirements>
<requirement type="package"
version="3.1.1">R_bioc_metams</requirement>
</requirements>
This is the repository_dependencies.xml :
<repositories description="Required metaMS dependencies.">
<repository toolshed="http://testtoolshed.g2.bx.psu.edu";
name="prims_metabolomics_dependencies" owner="pieterlukasse"
changeset_revision="71356c62e5cd" />
</repositories>
This is the package name of the package that is being referred:
<tool_dependency>
<package name="R_bioc_metams" version="3.1.1">
<install version="1.0">
<actions_group>
....
I can't find the problem. Any ideas? I have updated to the latest Galaxy
version (today) and removed both items (with option to remove files) and
installed them again. Am I facing a bug here?
Thanks,
Pieter Lukasse
Wageningen UR, Plant Research International
Department of Bioinformatics (Bioscience)
Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB,
Wageningen, the Netherlands
T: +31-317481122;
M: +31-628189540;
skype: pieter.lukasse.wur
http://www.pri.wur.nl<http://www.pri.wur.nl/>
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