That Galaxy version is quite old at this point. There were a couple fixes for the cleanup_job config handling over the last year that may have fixed the problem. I run with this option enabled daily and I have not seen any problems in months. If you can confirm this is still a problem with latest stable Galaxy instance - I would be definitely be eager to address any bugs.
-John On Sun, Nov 30, 2014 at 5:43 PM, Pandori n <pandorin...@gmail.com> wrote: > Hi all. > Config: > - galaxy-dist stable (changeset: 11247:a9a0ac9c1afa) [Dec/18/2013] > - NFS > - Cluster (torque) > > When i start my WF, on step 2, in 'job_working_directory' created temp > (intermediate) dir (for tool step 3). But when step 2 is completed, temp dir > (in 'job_working_directory') removed(via galaxy) and step 3 failed. In > 'universe_wsgi.ini' 'cleanup_job = never'. Why galaxy.jobs deleted temp > dir....? > > Any help is appreciated. Thanks. > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
