ok, thanks. Let me look at this. When I look at the information about the tool, Galaxy does see the exit code is 0, which I think would be sufficient to know the tool ran correctly.
On Tue, Apr 28, 2015 at 11:45 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > You probably need to set the <stdio> tag, since due to a > historical design choice by default any output on stderr > is treated as an error. See: > > https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax > > Peter > > On Tue, Apr 28, 2015 at 4:41 PM, Ryan G <ngsbioinformat...@gmail.com> > wrote: > > Hi - I implemented a tool I us into Galaxy but when I run the tool view > > Galaxy, Galaxy thinks the tool failed. I checked the output file the > tools > > create, and it succeeded. > > > > How do I tell Galaxy that a tool it ran was successful? Is it something > in > > my XML file? The tool is outputting some info to stderr. Could this be > > why? > > > > ___________________________________________________________ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > https://lists.galaxyproject.org/ > > > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/mailinglists/ >
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
