I fixed the error. It have been the directory permissions.
Found in galaxy log:
> tool_shed.util.hg_util DEBUG 2015-06-16 16:17:04,045 Error cloning
> repository: [Errno 13] Permission denied:
> '/mnt/galaxy/galaxy-app/gbs_tools/testtoolshed.g2.bx.psu.edu'
>
> But the question with the error message is still active, I guess.
2015-06-15 15:53 GMT-05:00 Alexander Vowinkel <vowinkel.alexan...@gmail.com>
:
> Hi,
>
> I have a custom tool_conf.xml in gbs_tools/gbs_tool_conf.xml
> It is added to the config and loaded without problems.
> "<toolbox tool_path="./gbs_tools">"
>
> But when I want to install tools from a toolshed (test and main)
> to it ("Shed tool configuration file"), it reports Error during
> installation.
>
> Clicking on the tool, it says "This repository is not installed
> correctly (see the Repository installation error below). [...]"
> But there is no "Repository installation error".
> So, how can I find out, what the problem is?
> Installing in the default tool_shed_conf.xml works.
>
> I also checked if it's a problem with the tool_path (I assume it
> points to the galaxy root). So I created a directory gbs_tools
> in gbs_tools, in case it is relative to the xml file directory.
> No difference.
>
> Thanks for help!
> Alexander
>
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