no - not a typo. The tool can process both.
It's just my naming, because I use it for fastq.
I'll change the help tag.
2015-06-25 3:44 GMT-05:00 Peter Cock <p.j.a.c...@googlemail.com>:
> Hi Alexander,
>
> If this wasn't a collection, I would expect format_source to work
> (possibly also using metadata_source="fastq_input1"), so perhaps
> this is a bug - John?
>
> Peter
>
> P.S. Your help caption and output label both say FASTQ, but the
> input also allows FASTA input. Typo?
>
> On Thu, Jun 25, 2015 at 2:39 AM, Alexander Vowinkel
> <vowinkel.alexan...@gmail.com> wrote:
> > Hi,
> >
> > I have an input, that can be fasta,fastqsanger,fastqillumina:
> >
> > <param name="fastq_input1" type="data"
> > format="fasta,fastqsanger,fastqillumina" label="Select the fastq file"
> > help="Specify fastq file with reads"/>
> >
> >
> > I have multiple outputfiles - bundled in a list collection:
> >
> > <collection name="split_output" type="list" label="@OUTPUT_NAME_PREFIX@
> on
> > ${on_string} (Fastq Collection)" format_source="fastq_input1">
> > <discover_datasets pattern="__name_and_ext__" directory="splits" />
> > </collection>
> >
> >
> > The format_source parameter doesn't work - the files in the list
> (extension
> > fq) are of format "fq"
> >
> > How can I make it possible that they are fasta,fastqsanger,fastqillumina
> > depending on fastq_input1?
> >
> > Thanks,
> > Alexander
> >
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