Here they are: ~/.planemo.yml: http://pastebin.com/nWdT6ybx Command-Log: http://pastebin.com/baBmrD8d
2015-06-29 15:23 GMT-05:00 John Chilton <jmchil...@gmail.com>: > Do you have a ~/.planemo.yml file? I think probably yes based on the > previous exception. Can you replace passwords and keys with XXXX and > send me a copy of that as well as the command-line that produced the > above output? > > -John > > On Mon, Jun 29, 2015 at 12:05 PM, Alexander Vowinkel > <vowinkel.alexan...@gmail.com> wrote: > > Thanks, > > > > now I get the following directly after the diff output: > > > >> Could not update stacks > >> object of type 'NoneType' has no len() > >> > >> > /usr/local/lib/python2.7/dist-packages/requests/packages/urllib3/connectionpool.py:768: > >> InsecureRequestWarning: Unverified HTTPS request is being made. Adding > >> certificate verification is strongly advised. See: > >> https://urllib3.readthedocs.org/en/latest/security.html > >> InsecureRequestWarning) > >> > >> > /usr/local/lib/python2.7/dist-packages/requests/packages/urllib3/connectionpool.py:768: > >> InsecureRequestWarning: Unverified HTTPS request is being made. Adding > >> certificate verification is strongly advised. See: > >> https://urllib3.readthedocs.org/en/latest/security.html > >> InsecureRequestWarning) > >> Repository metadata updated. > >> Failed to update a repository. > > > > > > What does that mean? > > > > Best, > > Alexander > > > > 2015-06-29 10:41 GMT-05:00 John Chilton <jmchil...@gmail.com>: > >> > >> Thanks for the bug report. I have fixed this problem here > >> > >> ( > https://github.com/galaxyproject/planemo/commit/a32d082eeee0a6b856d8d15c9619c97549230a17 > ) > >> and released a new version of planemo (0.13.0) with fix. Hopefully you > >> will get a better error message after the upgrade if there is still a > >> configuration issue. > >> > >> -John > >> > >> On Sat, Jun 27, 2015 at 6:32 AM, Björn Grüning > >> <bjoern.gruen...@gmail.com> wrote: > >> > Hi Alexander, > >> > > >> > I have opend an issue: > >> > https://github.com/galaxyproject/planemo/issues/240 > >> > > >> > Thanks for reporting, > >> > Bjoern > >> > > >> > Am 27.06.2015 um 07:11 schrieb Alexander Vowinkel: > >> >> Hi, > >> >> > >> >> I'm running: > >> >> > >> >> planemo shed_update --check_diff --shed_target toolshed > >> >> > >> >> > >> >> and get a python error message (see below). > >> >> > >> >> shed_diff and shed_lint are working fine. > >> >> planemo, version 0.12.2 > >> >> > >> >> Best, > >> >> Alexander > >> >> > >> >> > >> >> Traceback (most recent call last): > >> >>> File "/usr/local/bin/planemo", line 11, in <module> > >> >>> sys.exit(planemo()) > >> >>> File "/usr/local/lib/python2.7/dist-packages/click/core.py", line > >> >>> 664, > >> >>> in __call__ > >> >>> return self.main(*args, **kwargs) > >> >>> File "/usr/local/lib/python2.7/dist-packages/click/core.py", line > >> >>> 644, > >> >>> in main > >> >>> rv = self.invoke(ctx) > >> >>> File "/usr/local/lib/python2.7/dist-packages/click/core.py", line > >> >>> 991, > >> >>> in invoke > >> >>> return _process_result(sub_ctx.command.invoke(sub_ctx)) > >> >>> File "/usr/local/lib/python2.7/dist-packages/click/core.py", line > >> >>> 837, > >> >>> in invoke > >> >>> return ctx.invoke(self.callback, **ctx.params) > >> >>> File "/usr/local/lib/python2.7/dist-packages/click/core.py", line > >> >>> 464, > >> >>> in invoke > >> >>> return callback(*args, **kwargs) > >> >>> File "/usr/local/lib/python2.7/dist-packages/click/decorators.py", > >> >>> line > >> >>> 64, in new_func > >> >>> return ctx.invoke(f, obj, *args[1:], **kwargs) > >> >>> File "/usr/local/lib/python2.7/dist-packages/click/core.py", line > >> >>> 464, > >> >>> in invoke > >> >>> return callback(*args, **kwargs) > >> >>> File > >> >>> > >> >>> > "/usr/local/lib/python2.7/dist-packages/planemo/commands/cmd_shed_update.py", > >> >>> line 52, in cli > >> >>> tsi = shed.tool_shed_client(ctx, **kwds) > >> >>> File > >> >>> "/usr/local/lib/python2.7/dist-packages/planemo/shed/__init__.py", > >> >>> line 331, in tool_shed_client > >> >>> key = prop("key") > >> >>> File > >> >>> "/usr/local/lib/python2.7/dist-packages/planemo/shed/__init__.py", > >> >>> line 323, in prop > >> >>> return kwds.get("shed_%s" % key, None) or shed_config.get(key, > >> >>> None) > >> >>> AttributeError: 'NoneType' object has no attribute 'get' > >> >> > >> >> > >> >> > >> >> ___________________________________________________________ > >> >> Please keep all replies on the list by using "reply all" > >> >> in your mail client. To manage your subscriptions to this > >> >> and other Galaxy lists, please use the interface at: > >> >> https://lists.galaxyproject.org/ > >> >> > >> >> To search Galaxy mailing lists use the unified search at: > >> >> http://galaxyproject.org/search/mailinglists/ > >> >> > >> > ___________________________________________________________ > >> > Please keep all replies on the list by using "reply all" > >> > in your mail client. To manage your subscriptions to this > >> > and other Galaxy lists, please use the interface at: > >> > https://lists.galaxyproject.org/ > >> > > >> > To search Galaxy mailing lists use the unified search at: > >> > http://galaxyproject.org/search/mailinglists/ > > > > >
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
