Re: [galaxy-dev] output filter bugs

[Alexander Vowinkel]

2015-06-30 11:04 GMT-05:00 John Chilton <jmchil...@gmail.com>:

> On Mon, Jun 29, 2015 at 2:48 PM, Alexander Vowinkel
> <vowinkel.alexan...@gmail.com> wrote:
> > I have a tool with filtered outputs (<data [..]><filter>[...]</data>).
> >
> > A) As I understood the filters are pure python. But if I put it in
> > "<![CDATA[", it doesn't work. I think this should work even better ;)
>
> This sounds wrong - the standard library is handling the CDATA parsing
> for us and so Galaxy should be looking at an identical representation
> of the data. Are you sure you are using the CDATA tags correctly? I
> modified the test tool demonstrating output filters with the following
> patch (https://gist.github.com/jmchilton/1c8d13c01815a9b0fc8e) and ran
> the tool tests using the command:
>
> ./run_tests.sh -framework -id output_filter
>
> and everything seemed fine.
>

Yeah. Weird. Now I don't have problems anymore too.
Must have been something else.


> >
> > B) The workflow generator doesn't interpret the filters.
> > When I put the tool in a workflow, all possible outputs are shown. This
> > doesn't change when I change an option that would change the output
> choice.
> >
> > Can someone fix this? ;)
>
> This would be a nice enhancement - but it would take a lot of effort
> to implement. I would suspect we are going to be stuck with the
> display of invalid outputs for a while yet. I've created a Trello card
> for this issue:
>
> https://trello.com/c/Hcm2MlQg


What a pitty :(

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