Hi All,
We're having problems adding files to data libraries.
We'd like to create links to files instead of copying them into Galaxy. We can
create links if there aren't spaces in the paths. Also, we can copy files into
libraries even if there are spaces in the paths.
Unfortunately, we cannot create links to files when their paths contain spaces.
The job standard error and miscellaneous information are:
Miscellaneous information:uploaded RAW file Traceback (most recent call last):
File "/share/galaxy/working/002/2615/set_metadata_hnsR90.py", line 1, in
<module> from galaxy_ext.metadata.set_metadata import set_metadata;
set_metadata() File "/home/galaxy/Galaxy/galaxy-dist
Job Standard Error
Traceback (most recent call last):
File "/share/galaxy/working/002/2615/set_metadata_hnsR90.py", line 1, in
<module>
from galaxy_ext.metadata.set_metadata import set_metadata; set_metadata()
File
"/home/galaxy/Galaxy/galaxy-dist/lib/galaxy_ext/metadata/set_metadata.py", line
80, in set_metadata
filename_out = fields.pop( 0 )
IndexError: pop from empty list
error
We've set allow_library_path_paste = True in galaxy.ini.
We've also tried adding "" or '' around the path and get the following error
message:
Invalid paths: "home/galaxy/Galaxy/galaxy-dist/"/share/projects/2014 Test""
Any help or suggestions would be great.
Thanks,
Joe Greer
Proteomics Center of Excellence
Northwestern University
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