This is release_15.07 (last commit listed is 39f6730e5f50b54f372b8c1e17d86d8936b5899f) and ncbi_blast_plus c16c30e9ad5b. So no, its not an old Galaxy.
On 21 July 2015 at 17:37, Peter Cock <p.j.a.c...@googlemail.com> wrote: > Hi Peter v H, > > Which version of Galaxy are you running? > > Which version of ncbi_blast_tools are you running? (ideally down to > the ToolShed revision) > > My guess is that since this used to be .extra_files_path perhaps your > Galaxy is too old for .files_path to work? > > https://github.com/peterjc/galaxy_blast/commit/2bbbf7f361ada20bf1b5bd777fae6e0cb52c4a38 > > Thanks, > > Peter C. > > On Tue, Jul 21, 2015 at 3:08 PM, Peter van Heusden <p...@sanbi.ac.za> > wrote: > > Hi there > > > > I'm trying to use the blastp tools from the ncbi_blast_tools, but every > time > > I try and run a job I get the following error: > > > > Traceback (most recent call last): > > File > > "/net/ > datasrv3hs.sanbi.ac.za/cip0/software/galaxy/galaxysrv/galaxy/lib/galaxy/jobs/runners/__init__.py > ", > > line 163, in prepare_job > > job_wrapper.prepare() > > File > > "/net/ > datasrv3hs.sanbi.ac.za/cip0/software/galaxy/galaxysrv/galaxy/lib/galaxy/jobs/__init__.py > ", > > line 859, in prepare > > self.command_line, self.extra_filenames, self.environment_variables = > > tool_evaluator.build() > > File > > "/net/ > datasrv3hs.sanbi.ac.za/cip0/software/galaxy/galaxysrv/galaxy/lib/galaxy/tools/evaluation.py > ", > > line 422, in build > > raise e > > NotFound: cannot find 'files_path' while searching for > > 'db_opts.histdb.files_path' > > > > This is happening when expanding the tool template. The BLAST db in in > the > > history (thus the reference to histdb) but why can it not find this > > attribute? > > > > Peter > > > > ___________________________________________________________ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > https://lists.galaxyproject.org/ > > > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/mailinglists/ >
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