On Tue, Sep 29, 2015 at 1:12 PM, Fernandez Edgar <edgar.fernan...@umontreal.ca> wrote: > Hello Björn, > > Thank you for answering! > When I installed Prokka from the Galaxy ToolShed, all the dependencies were > installed too. > tbl2asn is one of those dependencies... > How would I replace it? > > Cordialement / Regards, > Edgar Fernandez
The way the NCBI deliberately make tbl2asn expire is very annoying for packaging and breaks strict reproducibility :( I think Bjoern was suggesting manually updating the copy of tbl2asn which the Tool Shed had downloaded (as a quick short term solution). You'd need to find this file within the Tool Shed dependencies folder... Philip - can you update package_tbl2asn_23_7 or add a new package if the version number has changed? Or would you like the IUC group to look after this in future? https://toolshed.g2.bx.psu.edu/view/takadonet/package_tbl2asn_23_7/ Nicola - once that's done, can you update the prokka dependency list - or would that fall to your old colleagues at CRS4? https://toolshed.g2.bx.psu.edu/view/crs4/prokka/ Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
