Hi Clare, I am sorry but you seem to have found the best resources already. Namely 'what dictionary keys to expect...in a particular Galaxy version' is a hard problem with the current docs. :/ We could definitely do a better job providing example calls and responses in the docs with the code, so they are versioned together.
I believe we are trying pretty hard not to break backward compatibility on both Galaxy side and BioBlend side so the change of file_name to file_path attribute you described sounds alarming. I will look into it. What I usualy do when I need to have a sample response is to actually call the endpoint using Postman Chrome extension ( https://chrome.google.com/webstore/detail/postman/fhbjgbiflinjbdggehcddcbncdddomop). However if you need this for multiple Galaxy versions it might be tedious to set them up. Sorry I couldn't be of more help. Thank you for using Galaxy! Martin On Wed, Sep 30, 2015 at 6:58 AM Clare Sloggett <s...@unimelb.edu.au> wrote: > Hi all, > > I'm wondering if there is any documentation of the JSON structures > returned by particular Galaxy REST API calls. > > Some aspects of the Galaxy API are effectively documented via > bioblend's structure, and others are documented at > http://galaxy.readthedocs.org/en/master/api_doc.html . However I don't > know where to look to find out the actual JSON structure that should > be returned by an API call. Does this exist? > > For instance, if I call (using bioblend) > gi.histories.show_history(..., contents=True, details="all"), > I will get back a list of dicts where each dict contains dataset metadata, > e.g.: > { u'api_type': u'file', > u'create_time': u'2015-09-28T06:00:19.850421', > u'data_type': u'galaxy.datatypes.sequence.FastqSanger', > u'file_name': u'/mnt/galaxy/files/000/dataset_2.dat', > .... > > I'd like to know how to find out what dictionary keys to expect for a > particular API call in a particular Galaxy version. In this example, > IIRC at some point the key 'file_name' changed to 'file_path', but I > don't know how to determine which version of Galaxy uses which > convention. I don't think this change would necessarily be reflected > in bioblend, because bioblend just returns the entire JSON structure > as a Python object without caring much about its contents. > > I also don't know how to derive this information from the Galaxy > source code itself (even though I know where the API code is under > webapp), so alternatively any guidance on that would be helpful! > > Thanks, > Clare > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/
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