I just recently submitted a patch that will display all the environment
variables being passed to Galaxy in pastor.log. That should help you determine
if the variables are set and to what.
Please excuse any typos -- Sent from my iPhone
> On Oct 21, 2015, at 6:11 AM, Floreline TOUCHARD
> <floreline.touch...@gmail.com> wrote:
>
> Hi,
>
> I've got an issue with my external authentication configuration. I use Apache
> and the mod_perl
>
> modules (AuthenNIS + AuthzNIS + Net-NIS) to authenticate to galaxy with NIS
> accounts.
>
> I have the authentication form when I try to access galaxy web page.
> But after a successful authentication it seems that the REMOTE_USER variable
> is not passed to my galaxy instance. I'm connected under "@example.org"
> regardless of the authentication account. That's why I think the REMOTE_USER
> passed to Galaxy is not 'null' but empty.
>
> I tested the value of the variable with the following php script:
>
> <?PHP
> foreach($_SERVER as $key_name => $key_value) {
> print $key_name . " = " . $key_value . "<br>";
>
> }
>
> ?>
>
> I've got a REMOTE_USER et HTTP_REMOTE_USER with a username value.
>
> I don't understand where my problem lies.
>
>
>
> Here is my galaxy.conf file :
>
> Listen 2208
>
> <VirtualHost *:2208>
>
>
> RewriteEngine on
> DocumentRoot "/path/to/static"
>
>
> <Directory "/path/to/static">
>
> Options +Indexes FollowSymLinks MultiViews
> AllowOverride None
> Order allow,deny
> Allow from all
>
>
> AuthType Basic
> AuthName "Authentifiez vous"
> PerlAuthenHandler Apache2::AuthenNIS
> PerlAuthzHandler Apache2::AuthzNIS
> PerlSetVar AllowAlternateAuth no
> require valid-user
>
>
> </Directory>
>
>
> RewriteEngine on
> RewriteRule . - [E=RU:%{LA-U:REMOTE_USER}]
> RequestHeader set REMOTE_USER %{RU}e
>
>
>
> RewriteRule ^/galaxy$ /galaxy/ [R]
> RewriteRule ^/static/style/(.*) /path/to/static/june_2007_style/blue/$1 [L]
> RewriteRule ^/static/scripts/(.*)
> /softhpc/galaxy/test/galaxy-master/static/scripts/packed/$1
>
> [L]
> RewriteRule ^/static/(.*) /path/to/static/$1 [L]
> RewriteRule ^/favicon.ico /path/to/static/favicon.ico [L]
> RewriteRule ^/robots.txt /path/to/static/robots.txt [L]
> RewriteRule ^(.*) http://localhost:2209$1 [P]
>
>
> </VirtualHost>
>
>
> Thanks in advance !
>
> F.T
>
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