Hello,
I am in the master branch and I recently pull all the changes to my local
Galaxy. However, when I run one tool I obtained this error:
Fatal error: Matched on Error:
Traceback (most recent call last):
File
"/steno-internal/projects/galaxy/galaxy-dist/database/job_working_directory/024/24973/set_metadata_GULyCa.py",
line 1, in <module>
from galaxy_ext.metadata.set_metadata import set_metadata; set_metadata()
File
"/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy_ext/metadata/set_metadata.py",
line 27, in <module>
import galaxy.model.mapping # need to load this before we
unpickle, in order to setup properties assigned by the mappers
File
"/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/model/mapping.py",
line 21, in <module>
from galaxy.model.custom_types import JSONType, MetadataType,
TrimmedString, UUIDType
File
"/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/model/custom_types.py",
line 15, in <module>
from galaxy import app
File "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/app.py",
line 14, in <module>
from galaxy.visualization.data_providers.registry import
DataProviderRegistry
File
"/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/visualization/data_providers/registry.py",
line 2, in <module>
from galaxy.visualization.data_providers import genome
File
"/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/visualization/data_providers/genome.py",
line 16, in <module>
from bx.bbi.bigbed_file import BigBedFile
File "bigbed_file.pyx", line 1, in init bx.bbi.bigbed_file
(lib/bx/bbi/bigbed_file.c:6272)
File "numpy.pxd", line 155, in init bx.bbi.bbi_file
(lib/bx/bbi/bbi_file.c:12669)
ValueError: numpy.dtype has the wrong size, try recompiling
I suppose there is a problem with the bx-python or numpy egg but I am not
really sure if is this. I run check_eggs.py and it did nothing and I also
try to update numpy for the system, which didn't work neither.
Do you know which numpy should I recompile in order to get this to work?
Regards,
Jose
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
