Hi Bob, > Thank you Eric, > > But I want to be clear after spending 3 days with help from others trying to > get this to work. > > 1. Config/plugin/visualization is where code goes to have a Galaxy internal > module display a user defined data type -- mine is binary
Yes. > 2. Datatype/data_applciations is where code goes for external displays that > use get and post reside. Yes. > 3. which if any of 1or2 above use the Tools/Visualization directory. Is > that for the return of a Get or Post? This is a tool. A completely different concept. Tools are entities that can run one a cluster and can run separated from the user interface. > 4. I create my own datatype in data_config_type.xml with a <datatype> tag Yes. > 5. 5 is missing :) Cheers, Bjoern > ----- Original Message -----From: Eric Rasche <e...@tamu.edu>To: > rbrown1422@comcast.netCc: galaxy-dev <galaxy-...@lists.bx.psu.edu>Sent: Tue, > 08 Dec 2015 02:34:47 -0000 (UTC)Subject: Re: [galaxy-dev] How does one run > Javascript or HTML as a tool? > > > > > Hi Bob, > > > Yes, galaxy supports output formats of HTML+JS, though the tool producing > them may need to be whitelisted (grep for 'whitelist' in your galaxy.ini) for > display to work properly. > > If you wish to write your own visualization plugin for a specific datatype, > there are assorted pieces of documentation on the wiki that might help you > (though I usually just look at one of the other existing visualization > plugins and copy+paste). > > > Cheers, > Eric > > 2015-12-07 20:08 GMT-06:00 <rbrown1...@comcast.net>: > > Good evening Galaxy team, > > Is it possible to run JavaScript or HTML as a tool or a display module? > > I see support for URLs, e.g. UCSC Genome Browser, but I would like to process > a specific datatype to allow it to be viewed in Galaxy -- but the application > is a combination of HTML and JavaScript. > > Does Galaxy support this? > > Thank you, > Bob > ___________________________________________________________ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/mailinglists/ > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
