Awesome! Glad you got it to work.
Am 13.01.2016 um 21:19 schrieb Laforest, Martin: > Seems to work after server reboot... > > Thanks > > Martin > > De : Laforest, Martin > Envoyé : 13 janvier 2016 10:00 > À : 'galaxy-dev@lists.galaxyproject.org' > Objet : RE: Bowtie2 > > Oups I made a mistake.... I have problems with the tophat wrapper, not > bowtie. Bowtie runs fine... > > Tophat - fast splice junction mapper for RNA-Seq reads > 4eb3c3beb9c7 > Devteam > > Packages package_bowtie_2_2_5 and package_2_0_14 are installed... > > Thanks > > Martin > > De : Laforest, Martin > Envoyé : 13 janvier 2016 09:43 > À : 'galaxy-dev@lists.galaxyproject.org' > Objet : Bowtie2 > > Hello, > > Please excuse my simple question since I'm a newbie... I've searched the > mailing list but did not find the appropriate answer... > > I have a new Galaxy installation. I installed the tool "Bowtie2: Fast and > sensitive read alignment" (Revision 019c2a81547a, Owner: devteam). The tool > apparently runs fine and I can download the BAM file at the end and see its > content (with IGV for example). > > The problem is that my dataset is red and when I check the error, I get > "OSError: [Errno 2] No such file or directory"... Maybe it is when Galaxy > tries to set the data type, I don't know. > > Many thanks for your help. > > Martin > > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
