Dear Nicola,
now it looks like package_gnu_coreutils_8_22 is generating an error gnu_coreutils <http://129.69.102.42/admin_toolshed/manage_repository_tool_dependencies?repository_id=e4c0e60daf76dabb&operation=browse&tool_dependency_ids=e96c6ce43a3d239a> 8.22 package Error Shutting down process id 23231 because it generated no output for the defined timeout period of 3600.0 seconds. I didn't find anything an this error on the web and I am not sure how I can fix this... cheers, philipp -----Original message----- From: Nicola Soranzo <nsora...@tiscali.it> Sent: Wednesday 23rd March 2016 12:49 To: Rathert, Philipp, Dr. <philipp.rath...@ibc.uni-stuttgart.de>; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] perl version 5.18.1 repository error Hi Philipp, can you try to reinstall the tool dependency? Go to the Admin interface, "Manage installed tools", click on the "package_perl_xml_parser_expat_2_41", then from the "Repository Actions" menu select "Manage tool dependencies", select the dependency in error and "Uninstall", then select it again and "Install" it. Cheers, Nicola On 23/03/16 08:06, Rathert, Philipp, Dr. wrote: Dear all, i am trying to install tool (meme-fimo) which needs package_perl_xml_parser_expat_2_41 that has a pearl 5.18.1 dependency. however, although the tool installs just fine it shows that package_perl_xml_parser_expat_2_41 has missing dependencies: Tool shed repository:package_perl_xml_parser_expat_2_41 Tool shed repository changeset revision:1ce3818a8eb9 Tool dependency status:Error Tool dependency installation error:Error installing tool dependency perl version 5.18.1: Unable to locate the repository directory for revision d905bb415eca of installed repository package_perl_5_18 owned by iuc. Tool dependency installation directory:././tool_deps/perl/5.18.1/iuc/package_perl_xml_parser_expat_2_41/1ce3818a8eb9 Is this an error of my local instance or is the revision missing on the toolshed? Thank you very much for your help. Cheers, philipp ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
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