Hi Eric, Take a look at this https://docs.galaxyproject.org/en/master/admin/framework_dependencies.html#wheel-interaction-with-other-software . I hope that should be sufficient.
Cheers, Marius On 11 April 2016 at 14:25, Eric Kuyt <eric.ku...@wur.nl> wrote: > Hi Marius, > > Now I ran in to some problems. > > When trying to change metadata of a file, the python path changes (these > tools run using drmaa) to the normal system version. Here tools are ending > in error becaus sqlalchemy.orm cannot be found. I can ofcourse install > sqlarchemy-python systemwide. But this woudn't make me very happy. > > in File: <galaxy>/lib/galaxy_ext/metadata/set_metadata.py > a sys.path.insert to .venv/lib should be added. I don't know what the > right plcae for this is. > > Do you hava any better ideas for this matter? > > Eric > > > > > On 8 April 2016 at 16:15, Eric Kuyt <eric.ku...@wur.nl> wrote: > >> Thanks, works like a charm! Clean easy fix, Now why I couldn't come up >> with this myself. >> >> On 2 April 2016 at 11:49, Marius van den Beek <m.vandenb...@gmail.com> >> wrote: >> >>> ld have been mentioned with the release notes. >>> I didn't test this, but it might be sufficient to replace >>> PYTHON="/usr/bin/python" >>> with PYTHON="<path/to/venv/bin/python>". >>> If that is sufficient for you, let us know and we will update the wiki >>> and adjust the script in >>> >> >> >> >> >> -- >> Central Veterinary Institute of Wageningen UR (CVI) >> Department of Infection Biology >> PO box 65, 8200 AB Lelystad, NL >> Visiting address: ASG, Edelhertweg 15, 8219 PH Lelystad >> >> Tel: +31-(0)320-293391 >> Fax: +31-(0)320-238153 >> E-mail: eric.ku...@wur.nl >> Web: http://www.cvi.wur.nl >> > > > > -- > Central Veterinary Institute of Wageningen UR (CVI) > Department of Infection Biology > PO box 65, 8200 AB Lelystad, NL > Visiting address: ASG, Edelhertweg 15, 8219 PH Lelystad > > Tel: +31-(0)320-293391 > Fax: +31-(0)320-238153 > E-mail: eric.ku...@wur.nl > Web: http://www.cvi.wur.nl >
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