On Thu, Sep 1, 2016 at 9:36 AM, Katherine Beaulieu < katherine.beaulieu...@gmail.com> wrote:
> Hi Peter, > The code file tag is generally used in populating select lists. So > basically you have a function from a code file that is loaded before > runtime of the tool and you can dynamically load content based on that > function and you can pass it parameters from your tool but I'm wondering > how you would pass it the contents of a repeat parameter. > This is how the code file tag works: > https://wiki.galaxyproject.org/Admin/Tools/Custom%20Code > Thanks, > Katherine > > On Thu, Sep 1, 2016 at 8:23 AM, Peter Cock <p.j.a.c...@googlemail.com> > wrote: > >> I'm not quite sure what you mean by a "code file", but if you >> mean using the <configfile> tag, here's an example: >> >> https://github.com/peterjc/galaxy_mira/blob/master/tools/mir >> a4_0/mira4_de_novo.xml >> >> I am using a Cheetah syntax for loop to access each entry >> in a repeat parameter. >> >> Peter >> >> On Thu, Sep 1, 2016 at 12:58 PM, Katherine Beaulieu >> <katherine.beaulieu...@gmail.com> wrote: >> > Hello Galaxy Community, >> > I was wondering if anyone had ever come across a situation where they >> have >> > had to pass the contents of a repeat parameter to a code file in a >> Galaxy >> > tool config? Is there any way to do this? >> > Katherine >> > >> > ___________________________________________________________ >> > Please keep all replies on the list by using "reply all" >> > in your mail client. To manage your subscriptions to this >> > and other Galaxy lists, please use the interface at: >> > https://lists.galaxyproject.org/ >> > >> > To search Galaxy mailing lists use the unified search at: >> > http://galaxyproject.org/search/mailinglists/ >> > >
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