Hello Bjoern
Yes it looks like making the 'default' directory into a symlink makes
this work.
Thanks for your help and sorry not to get back to you sooner!
Best wishes
Peter
On 20/01/17 16:56, Björn Grüning wrote:
Hi Peter,
can you try to make /path/to/local_tool_dependencies/my_package/default
a symlink?
Ciao,
Bjoern
Am 20.01.2017 um 16:41 schrieb Peter Briggs:
Dear developers
I'm having problems trying to use the 'galaxy_packages' dependency resolver in
versionless mode, as described in the docs at:
https://docs.galaxyproject.org/en/latest/admin/dependency_resolvers.html#galaxy-packages-dependency-resolver
As I understand this: if I manually create a directory structure of the form
e.g. /path/to/local_tool_dependencies/my_package/default/ which contains an
env.sh file, and if my dependency_resolvers_conf.xml file includes the line:
<galaxy_packages base_path="/path/to/local_tool_dependencies" versionless="true"
/>
then at run time Galaxy should be able to resolve the following requirement in
a tool XML file:
<requirement type="package">my_package</requirement>
Unfortunately although the "versioned" galaxy_packages resolver works as expected (when
placed ahead of the "versionless" resolver), I don't seem able to get this working with
Galaxy v16.10.
Can anyone point out what I'm doing wrong?
Thanks!
Best wishes
Peter
--
Peter Briggs peter.bri...@manchester.ac.uk
Bioinformatics Core Facility University of Manchester
B.1083 Michael Smith Bldg Tel: (0161) 2751482
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--
Peter Briggs peter.bri...@manchester.ac.uk
Bioinformatics Core Facility University of Manchester
B.1083 Michael Smith Bldg Tel: (0161) 2751482
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