Hi Miuki, There's definitely a bit of out of date info on Torque integration. Here's what I've done most recently.
Torque Which version do you have? Try: rpm -qi torque Name : torque Relocations: /usr Version : 6.0.2 Vendor: redhat Release : 1.adaptive.el6 Build Date: Mon 05 Dec 2016 09:33:30 PM EST ~ If that doesn't work, do: ~ /usr/bin/qsub --version Version: 6.0.2 Where are your Torque libraries? which qsub /usr/bin ldd /usr/bin/qsub libtorque.so.2 => /usr/lib64/libtorque.so.2 (0x00007f58b8f18000) ~ or ~ rpm -ql torque | grep "\.so" /usr/lib64/libtorque.so rpm -ql torque-drmaa | grep "\.so" /usr/lib64/libdrmaa.so Environment variables Use the information gained above to set your environment to point to the right libraries export DRMAA_LIBRARY_PATH=/usr/lib64/libdrmaa.so export LD_LIBRARY_PATH=/usr/lib64:LD_LIBRARY_PATH export LIBTORQUE_DIR=/usr/lib64 I think the libdrmaa.so is working ok now for Torque 6, so I'll use it instead of getting another libdrmaa. Python This will be a lot easier on you if you are using a virtualenv for Galaxy. This is the default behavior on recent Galaxy builds. To use, make sure your above environment variables are set, and then do: cd galaxy source .venv/bin/activate pip install drmaa-python deactivate Now give Galaxy a kick and see if it works! -Carrie From: "Yip, Miu ki" <m...@cshl.edu<mailto:m...@cshl.edu>> Date: Monday, February 27, 2017 at 12:26 PM To: "galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>" <galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>> Subject: [galaxy-dev] Galaxy and Torque Hi all, Is Torque still supported as a resource manager? This page ( https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster ) mentioned the usage of Torque and how to set it up. However, the setup instructions refer to a /script/scramble.py file which I assume interfaces with eggs. If I recall correctly, eggs were upgraded to wheels. Does this mean there are upgraded scripts in place of scramble.py and the eggs.ini? I saw this page ( https://biostar.usegalaxy.org/p/20470/ ) and it looks like nobody has a solution to this. Thanks!
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