How are you running planemo lint - in particular is it set to fail if there are any warnings present (like your missing citation warning)?
Peter On Wed, Jul 12, 2017 at 3:52 PM, Matthias Bernt <m.be...@ufz.de> wrote: > Dear list, > > In order to test the job resubmission feature I wrote a little tool for > galaxy that just wastes a specified (minimum) time and memory (using > different programming languages) for testing the new DRMAA job runner that I > wrote. > > When linting it with planemo seemingly all tests are successful, but in the > end I still get a fail -- verbose mode is also of no help here. > > Applying linter tests... CHECK > .. CHECK: 7 test(s) found. > Applying linter output... CHECK > .. INFO: 1 outputs found. > Applying linter inputs... CHECK > .. INFO: Found 3 input parameters. > Applying linter help... CHECK > .. CHECK: Tool contains help section. > .. CHECK: Help contains valid reStructuredText. > Applying linter general... CHECK > .. CHECK: Tool defines a version [0.1.0]. > .. CHECK: Tool defines a name [Waste time and memory]. > .. CHECK: Tool defines an id [sleepwaste]. > .. CHECK: Tool targets 16.01 Galaxy profile. > Applying linter command... CHECK > .. INFO: Tool contains a command. > Applying linter citations... WARNING > .. WARNING: No citations found, consider adding citations to your tool. > Applying linter tool_xsd... CHECK > .. INFO: File validates against XML schema. > Failed linting > > The test of the tool are all successful. Any ideas what is wrong? > > Once the problems are solved, would such a tool also be useful in the > toolshed? > > Cheers, > Matthias > > > > -- > > ------------------------------------------- > Matthias Bernt > Bioinformatics Service > Molekulare Systembiologie (MOLSYB) > Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ > Helmholtz Centre for Environmental Research GmbH - UFZ > Permoserstraße 15, 04318 Leipzig, Germany > Phone +49 341 235 482296, > m.be...@ufz.de, www.ufz.de > > Sitz der Gesellschaft/Registered Office: Leipzig > Registergericht/Registration Office: Amtsgericht Leipzig > Handelsregister Nr./Trade Register Nr.: B 4703 > Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig > Wilfried Kraus > Wissenschaftlicher Geschäftsführer/Scientific Managing Director: > Prof. Dr. Dr. h.c. Georg Teutsch > Administrative Geschäftsführerin/ Administrative Managing Director: > Prof. Dr. Heike Graßmann > ------------------------------------------- > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
