Hi Evan,
just for completeness Marius is referring to these changes:
https://github.com/galaxyproject/galaxy/pull/4049
For testing you could also integrate these changes in your instance, but
upgrading to an up-to-date version is a good idea anyways.
Best,
Matthias
Hello Evan,
this looks suspiciously like a bug that Matthias Bernt has fixed on the
development branch a while back.
I have backported this to Galaxy release 17.01 and release 17.05.
If you update your galaxy branch to the latest commit it should work (or
you should receive a more instructive error message).
Hope that helps,
Marius
On 17 August 2017 at 18:32, evan clark <eclar...@fau.edu> wrote:
I just ran across an issue when attempting to load galaxy. I am not sure
how to fix this issue or what could be causing it. Conda is installed
properly.
File "/var/web_services/galaxy/lib/galaxy/webapps/galaxy/buildapp.py",
line 58, in paste_app_factory
app = galaxy.app.UniverseApplication( global_conf=global_conf,
**kwargs )
File "/var/web_services/galaxy/lib/galaxy/app.py", line 113, in __init__
self._configure_toolbox()
File "/var/web_services/galaxy/lib/galaxy/config.py", line 935, in
_configure_toolbox
self.toolbox = tools.ToolBox( tool_configs, self.config.tool_path,
self )
File "/var/web_services/galaxy/lib/galaxy/tools/__init__.py", line 205,
in __init__
app=app,
File "/var/web_services/galaxy/lib/galaxy/tools/toolbox/base.py", line
1044, in __init__
self._init_dependency_manager()
File "/var/web_services/galaxy/lib/galaxy/tools/toolbox/base.py", line
1057, in _init_dependency_manager
self.dependency_manager = build_dependency_manager( self.app.config )
File "/var/web_services/galaxy/lib/galaxy/tools/deps/__init__.py", line
41, in build_dependency_manager
dependency_manager = DependencyManager( **dependency_manager_kwds )
File "/var/web_services/galaxy/lib/galaxy/tools/deps/__init__.py", line
84, in __init__
self.dependency_resolvers = self.__build_dependency_resolvers(
conf_file )
File "/var/web_services/galaxy/lib/galaxy/tools/deps/__init__.py", line
193, in __build_dependency_resolvers
return self.__default_dependency_resolvers()
File "/var/web_services/galaxy/lib/galaxy/tools/deps/__init__.py", line
201, in __default_dependency_resolvers
CondaDependencyResolver(self),
File "/var/web_services/galaxy/lib/galaxy/tools/deps/resolvers/conda.py",
line 134, in __init__
self.disabled = not galaxy.tools.deps.installable.
ensure_installed(conda_context, install_conda, self.auto_init)
File "/var/web_services/galaxy/lib/galaxy/tools/deps/installable.py",
line 77, in ensure_installed
return ensure_installed(installable_context, auto_init)
TypeError: ensure_installed() takes exactly 3 arguments (2 given)
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