Dear peter,
thanks for your comments. I tried to update:
`planemo shed_update --shed_target testtoolshed`
But planemo also complains about non existent repository:
```
Repository [fasta_regex_finder] does not exist in the targeted Tool Shed.
Failed to update repository 'fasta_regex_finder' as it does not exist on
the test Tool Shed
```
Cheers,
Matthias
On 18.12.2017 10:45, Peter Briggs wrote:
Hello Matthias
My reading of the planemo docs it was that "shed_create" just made the repository, and
that it had to be followed by the "shed_update" command in order to upload the actual
content. (The documentation could probably be clearer on this I think.)
I'm not sure about the error from "shed_diff", maybe related to the repository
not having any content.
Best wishes
Peter
--
Peter Briggs peter.bri...@manchester.ac.uk
Bioinformatics Core Facility University of Manchester
B.1083 Michael Smith Bldg Tel: (0161) 2751482
________________________________________
From: galaxy-dev [galaxy-dev-boun...@lists.galaxyproject.org] on behalf of
Matthias Bernt [m.be...@ufz.de]
Sent: Monday, December 18, 2017 9:37 AM
To: Galaxy Dev List
Subject: [galaxy-dev] tool publishing
Dear dev-list,
I'm just trying to publish my first tool to the testtoolshed via
planemo. I got some problem during the process. Maybe someone can
kickstart me (I guess I just forgot something).
I followed http://planemo.readthedocs.io/en/latest/publishing.html
The step
`planemo shed_create --shed_target testtoolshed`
```
Repository created
cd '/home/berntm/projects/mb-galaxy-tools/fasta_regex_finder' && git
rev-parse HEAD
cd '/home/berntm/projects/mb-galaxy-tools/fasta_regex_finder' && git
diff --quiet
Repository [fasta_regex_finder] does not exist in the targeted Tool Shed.
```
When I check online the repository is there but no changeset seems
available. Retrying fails (expected):
`planemo shed_create --shed_target testtoolshed`
```
Unexpected HTTP status code: 400: {"err_msg": "You already own a
repository named <b>fasta_regex_finder<\/b>, please choose a different
name.", "err_code": 400008}
````
Also shed_diff fails
`fasta_regex_finder git:(master) ✗ planemo shed_diff --shed_target
testtoolshed`
```
shed_diff: Repository [fasta_regex_finder] does not exist in the
targeted Tool Shed.
```
Any idea?
Cheers,
Matthias
--
-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.be...@ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/
--
-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.be...@ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/
