Dear list,
I started a little toy project (.. aka procrastination) that I would
like to share here. It produces a graph connecting tool ids and
input/output formats. As input it takes an arbitrary number of tool xml
files
https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tool-io-graph
I could imagine some use cases:
- could be nice for auto-generation of the documentation of a single
tool (planemo?)
- for tool suites one could easily check if the all tools are connected
(I would expect this)
- one could explore how tools could be plugged together, find out which
tools generate a needed format
currently it outputs dot formatted graphs.
I can easily see some extensions
- filter for subsets of tools / formats
- get the surrounding of a tool (e.g. all nodes in distance 2, 4, ...)
- filter paths from an available input to a desired output format
Cheers,
Matthias
--
-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.be...@ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
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