Hi George, on our instance I have noticed that the tmp (new_file_path) was taking up quite some space and files were only deletable after restarting the web / uwsgi process.
FYI a while ago I wrote this script which should ease the cronjob setup a bit (does not cleanup tmp though): https://github.com/galaxyproject/galaxy/blob/dev/scripts/maintenance.sh Cheers, Jelle On Tue, Oct 30, 2018 at 5:04 AM George Weingart <george.weing...@gmail.com> wrote: > Hello, > > We are incurring a problem with cleanup.py: > > We have already run two cycles of cleanup.py (1-6) with a cut off of 30 > days, we see in the logs that many datasets are deleted, but when we do > df -kh to check the file system, we see creeping up utilization of space - > no relinquishing of any space. > > We are running in a docker environment and our cleanup job looks as > follows: > ================================================================ > > #!/bin/bash > > export GALAXY_VIRTUAL_ENV=/galaxy_venv > > source $GALAXY_VIRTUAL_ENV/bin/activate > > export > script="/galaxy-central/scripts/cleanup_datasets/cleanup_datasets.py" > > export config="/etc/galaxy/galaxy.ini" > > export logdir="/export/galaxy-central/logs" > > export days=30 > > export num=$1 > > nohup $script $config -d $days -$num -r -f >> $logdir/cleanup$num.log & > > ================================================================ > > > and we run it with ./run_cleanup.sh 1 > > or 2, 3 etc. > > > Any ideas ? > > > Thanks! > > George Weingart PhD > > Huttenhower Lab > > Harvard School of Public Health > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/
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