Dear list,
just tried to switch to galaxy.yml, which worked in general, but now
tools that have been installed from the TS disappeared. In the logs I
get for each tool:
```
galaxy.tools.toolbox.base ERROR 2018-12-19 13:28:15,815
[p:22877,w:0,m:0] [MainThread] Error reading tool from path:
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/74a8bef53a00/text_processing/cat.xml
Traceback (most recent call last):
File "lib/galaxy/tools/toolbox/base.py", line 563, in _load_tool_tag_set
tool_shed_repository = self.get_tool_repository_from_xml_item(item,
path)
File "lib/galaxy/tools/toolbox/base.py", line 629, in
get_tool_repository_from_xml_item
raise Exception(msg)
Exception: Attempted to load tool shed tool, but the repository with
name 'text_processing' from owner 'bgruening' was not found in database
```
Any idea what could be wrong here? The connection to the DB seems to be
functional, since I can see the users in the admin Panel.
Cheers,
Matthias
--
-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.be...@ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
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