Hi Sarah,
which GTF file are you using? Please make sure every exon line has a
transcript_id.
Cheers,
Bjoern
Am 25.11.19 um 10:53 schrieb Sarah Maman:
?Hello,
Please could you help me to run this wrapper : RNA STAR Gapped-read mapper for
RNA-seq data (Galaxy Version 2.7.2b)
without this error:
terminate called after throwing an instance of 'std::out_of_range'
what(): basic_string::at
/galaxydata/galaxy-prod/my_job_working_directory/000/282/282124/tool_script.sh:
line 9: 48744 Aborted (core dumped) STAR --runThreadN
${GALAXY_SLOTS:-4}...
Even if I increase the number of genome bins for coordinate-sorting, output
files are all empty and I read this stderr above.
Thanks in advance,
Sarah Maman
INRA | SIGENAE | GenPhySE | INRA Occitanie-Toulouse
Tél. : +33(0)5.61.28.57.08
Télétravail lundi / vendredi
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
%(web_page_url)s
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
%(web_page_url)s
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/
