Karl, For the URL you're pasting, is it the full path to a file in your s3 bucket, including the protocol (http://) ? For galaxy to recognize that it needs to pull from a URL rather than the contents of the box, you need to use the full string.
-Dannon On Mar 14, 2011, at 4:40 PM, karlerh...@berkeley.edu wrote: > > Hello, > > I have been able to get Galaxy to instantiate on our Cloud account, and > would like to use the NGS tools to trim and map Illumina libraries. > > However, when I tried to import .txt files (the data contained in these > files are in fastq format) located in an S3 bucket, Galaxy did not > recognize them as fastq data. I tried to import the files via the URL of > the S3 bucket, and Galaxy just imported the actual name of the URL rather > than the file itself. > > Do I need to change the extension of these .txt files to .fastq? Or have > I gotten something wrong with respect to the location of the data in the > S3 bucket? > > thanks for any help! > > karl > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
