Karen, Sorry for the slow reply. There are no immediate plans to add either BED-to-GFF3 or GTF-to-GFF3 converters to Galaxy main or the Galaxy codebase.
However, if you're working with your own Galaxy, you might encourage the Rätsch lab to contribute their tools to the Galaxy Tool Shed (http://community.g2.bx.psu.edu/); you could then download them from there and install them in your own Galaxy. Alternatively, we welcome community contributions to the Galaxy codebase, and we'd be happy to incorporate these tools if they came with functional tests and test data. Best, J. On Mar 7, 2011, at 11:34 AM, Karen Tang wrote: > Hi Galaxy developers, > > Any plans on adding a GTF-to-GFF3 format conversion? > > This converter is at the Rätsch lab's instance of Galaxy > (http://galaxy.tuebingen.mpg.de/). Could it be made more > widely available? > > Karen :) > Dept of Plant Biology > University of > Minnesota___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
