I use IGV outside of Galaxy. If you download your bam and bam index
files you can load those and your reference into IGV to visualise them.
On 04/08/2011 00:03, Jiannong Xu wrote:
Hi Jen,
I mapped illumine reads to draft genomic contigs, and try to visualize the
mapping. Is there any way I can use my own reference contigs for visualization?
Thanks
John Xu
NMSU
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___________________________________________________________
The Galaxy User list should be used for the discussion of
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using "reply all" in your mail client. For discussion of
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